
Publications
Vargas, L.; Santa Brígida, A.B.; Mota Filho, J.P.; de Carvalho, T.G.; Rojas, C.A.; Vaneechoutte, D.; Van Bel, M.; Farrinelli, L.; Ferreira, P.C.G; Vandepoele, K.; Hemerly, A.S. Drought Tolerance Conferred to Sugarcane by Association with Gluconacetobacter diazotrophicus: A Transcriptomic View of Hormone Pathways. PLoS ONE, v.9, 12, p. e114744, 2014.
de Carvalho, T. L. G.; Pires, E. B.; Saraiva, R. ; Ferreira, P. C. G. ; Hemerly, A. S. Nitrogen signalling in plant interactions with associative and endophytic diazotrophic bacteria. Journal of Experimental Botany, 2014.
Thiebaut,F. ; Rojas, C. ; Grativol, C. ; Motta, M. R. ; Vieira, T. ; Regulski, M. ; Martienssen, R. A. ; Farinelli, L. ; Hemerly, A. S. ; Ferreira, P. C. G. Genome-wide identification of microRNA and siRNA responsive to endophytic beneficial diazotrophic bacteria in maize. BMC Genomics, v. 15, p. 766, 2014.
Grativol, C.; Regulski, M.; Bertalan, M.; McCombie, W.; da Silva, F.; Zerlotini Neto, A.; Vicentini, R.; Farinelli, L.; Hemerly, A.; Martienssen, R.; Ferreira, P. Sugarcane genome sequencing by methylation filtration provides tools for genomic research in the genus Saccharum. The Plant Journal, v. 79, 1, p. 162–172, 2014.
Thiebaut, F.; Grativol, C.; Tanurdzic, M.; Carnavale-Bottino, M.; Vieira, T.; Motta, M.R.; Rojas, C.A.; Vicentini, R.; Chábregas, S.M.; Hemerly, A.S.; Martienssen, R.A.; Ferreira, P.C.G. Differential sRNA Regulation in Leaves and Roots of Sugarcane under Water Depletion. Plos One, v. 9, p. e593822, 2014.
Lima, Marcelo F.; Eloy, Nubia B.; Bottino, M. C.; Hemerly, Adriana S.; Ferreira, P. C. G. . Overexpression of the anaphase-promoting complex (APC) genes in Nicotiana tabacum promotes increasing biomass accumulation. Molecular Biology Reports, 2013, Dec;40(12):7093-102.
Carnavale-Bottino, M.; Rosario, S.; Grativol, C.; Thiebaut, F.; Rojas, C.A.; Farinelli, L.; Hemerly, A.S.; Ferreira, P.C.G. High-throughput sequencing of small RNA transcriptome reveals salt stressed regulated microRNAs in sugarcane. Plos One, v. 8, p. e59423, 2013.
Thiebaut, F.; Rojas, C.A.; Almeida, K.L.; Grativol C.; Domiciano, G.C.; Lamb, C.R.C.; De Almeida Engler, J.; Hemerly, A.S.; Ferreira, P.C.G. Regulation of miR319 during cold stress in sugarcane. Plant, Cell and Environment (Print), v. 35, p. 502-512, 2012.
Grativol C.; Hemerly, A.S.; Ferreira, P.C.G. Genetic and epigenetic regulation of stress responses in natural plant populations. BBA-GENE REGUL MECH, v. 1819, p. 176-185, 2012.
Maia, V.H.; Mata, C.S.; Franco, L.O.; Cardoso, M.A.; Cardoso, S.R.S.; Hemerly, A.S.; Ferreira, P.C.G. DNA Barcoding Bromeliaceae: Achievements and Pitfalls. Plos One, v. 7, p. e29877, 2012.
Thiebaut, F.; Grativol C.; Bottino, M.C.; Rojas, C.A.; Tanurdzic, M.; Martienssen, R.A.; Hemerly, A.S.; Ferreira, P.C.G. Computational identification and analysis of novel sugarcane microRNAs. BMC Genomics, v. 13, p. 290, 2012.
Vargas, L.; Carvalho, T.L.G.; Ferreira, P.C.G.; Baldani, V.L.D.; Baldani, J.I.; Hemerly, A.S. Early responses of rice (Oryza sativa L.) seedlings to inoculation with beneficial diazotrophic bacteria are dependent on plant and bacterial genotypes. Plant and Soil (Dordrecht. Online), v. 356, p. 127-137, 2012.
Grativol C.; Lira-Medeiros, C.F.; Hemerly, A.S.; Ferreira, P.C.G. High efficiency and reliability of inter-simple sequence repeats (ISSR) markers for evaluation of genetic diversity in Brazilian cultivated Jatropha curcas L. accessions. Molecular Biology Reports, v. 38, p. 4245-4256, 2011.
Barreto, M.B.B.B.; Marinho, L.C.; Da Mata, C.S.; Reis, R.P.; Ferreira, P.C.G. Journal of Applied Phycology Kappaphycus alvarezii (Gigartinales, Rhodophyta) cultivated in Brazil: Is it only one species?. Journal of Applied Phycology, v. 24, p. e12/12, 2012.
Eloy, N.B.; Eloy, N.B.; Gonzalez, N.; Van Leene, J.; Maleux, K.; Vanhaeren, H.; De Milde, L.; Dhondt, S.; Vercruysse, L.; Witters, E.; Mercier, R.; Cromer, L.; Beemster, G. T. S.; Remaut, H.; Van Montagu, M. C. E.; Ferreira, P.C.G.; De Jaeger, G.; INZE, D. SAMBA, a plant-specific anaphase-promoting complex/cyclosome regulator is involved in early development and A-type cyclin stabilization. Proceedings of the National Academy of Sciences of the United States of America (Online), v.109, p.13853-13858, 2012.
Bastos, C.L.; Da Mata, C.S.; Maia, V.H.; Borges, R.A.X.; Franco, L.O.; Ferreira, P.C.G.; Tamaio, N. Anatomic and molecular identification of guaco Mikania glomerata and Mikania laevigata (Asteraceae), two important medicinal species from Brazil. Journal of Medicinal Plant Research, v.5, p.4579-4583, 2011.
Lery, L.M.S.; Hemerly, A.S.; Nogueira, E.M.; Von Krüger, W.M.A.; Bisch, P.M. Quantitative Proteomic Analysis of the Interaction Between the Endophytic Plant-Growth-Promoting Bacterium and Sugarcane. Molecular Plant-Microbe Interactions, v.24, p.562-576, 2011.
Carvalho, T.L.G.; Ferreira, P.C.G.; Hemerly, A.S. Sugarcane Genetic Controls Involved in the Association with Beneficial Endophytic Nitrogen Fixing Bacteria. Tropical Plant Biology, v.4, p.31-41, 2011.
Eloy, N.B.; Lima, M.F.; Van Damme, D.l; Vanhaeren, H.; Gonzalez, N.; De Milde, L.; Hemerly, A.S.; Beemster, G.T.S.; Inzé, D.; Ferreira, P.C.G. The APC/C subunit 10 plays an essential role in cell proliferation during leaf development.Plant Journal (Print), v.67, p.no-no, 2011.
Lira-Medeiros, C.F.; Parisod, C.; Fernandes, R.A; Mata, C.S.; Cardoso, M.A.; Ferreira, P.C.G. Epigenetic Variation in Mangrove Plants Occurring in Contrasting Natural Environment. Plos One, v.5, p.e10326, 2010.
Leene, J.V.; Hollunder, J.; Eeckhout, D.; Persiau, G.; Slijke, E.V.; Stals, H.; Isterdae, G.V.; Verkest, A.; Neirynck, S.; Buffel, Y.; Maere, S.; Bodt, S.; Laukens, K.; Pharazyn, A.; Ferreira, P.C.G.; Eloy, N.B.; Renne, C.; Meyer, C.; Faure, J.; Steinbrenner, J.; Beynon, J.; Larkin, J.; Peer, Y.V.; Hilson, P.; Kuiper, M.; et al. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Molecular Systems Biology, v.6, p.1-11, 2010.
Dos Santos, M.F.; Pádua, V.L.M.; Nogueira, E.M.; Hemerly, A.S.; Domont G.B. Proteome of Gluconacetobacter diazotrophicus co-cultivated with sugarcane plantlets. Journal of Proteomics (Print), v.72, p.917-931, 2010.
Rojas, C.A.; Hemerly, A.S.; Ferreira, P.C.G. Genetically modified crops for biomass increase: Genes and strategies. GM Crops, v.1, p.137-142, 2010.
Lima, M.F.; Eloy, N.B.; Pegoraro, C.; Sagit, R.; Rojas, C.A.; Bretz, T.; Vargas, L.; Elofsson, A.; De Oliveira, A.; Hemerly, A.S; Ferreira, P.C.G. Genomic evolution and complexity of the Anaphase-promoting Complex (APC) in land plants. BMC Plant Biology (Online), v.10, p.254, 2010.
de Almeida Engler, J.; De Veylder, L.; De Groodt, R.; Rombauts, S.; Boudolf, V.; De Meyer, B.; Hemerly, A.S.; Ferreira, P.C.G.; Beeckman, T.; Karimi, M.; Hilson, P.; Inzé, D.; Engler, G. Systematic analysis of cell-cycle gene expression during Arabidopsis development. Plant Journal, v.59, p.645-660, 2009.
Hemerly, A.S.; Prasanth, S.G.; Siddiqui, K.; Stillman, B. Orc1 Controls Centriole and Centrosome Copy Number in Human Cells. Science, v.323, p.789-793, 2009.
Rojas, C.A.; Eloy, N.B.; Lima, M.F.; Rodrigues, R.L.; Franco, L.O.; Himanen, K.; Beemster, G.T.S.; Hemerly, A.S.; Ferreira, P.C.G. Overexpression of the Arabidopsis anaphase promoting complex subunit CDC27a increases growth rate and organ size. Plant Molecular Biology, v.71, p.307-318, 2009.
Lery, L.S.; Coelho, A.; Von Kruger, W.M.A.; Gonçalves, M.S.M.; Santos, M.F.; Valente, R.H.; Santos, E.O.; Rocha, S.L.G.; Perales, J.; Domont, G.B.; Teixeira, K.R.S.; Bertalan, M.; Ferreira, P.C.G.; Bisch, P. Protein expression profile of Gluconacetobacter diazotrophicus PAL5, a sugarcane. Proteomics, v.8, p.1631-1644, 2008.
Loureiro, M.M.; Bertalan, M.; Turque, A.S.; França, L.M.; Padua, V.L.M.; Baldani, J.I.; Martins, O.B.; Ferreira, P.C.G. Physical and genetic map of the Gluconacetobacter diazotrophicus PAL5 chromosome. Revista Latinoamericana de Microbiología (1970), v.50, p.19-28, 2008.
Pacheco, G.; Cardoso, S.R.S.; Gagliardi, R.F.; Valls, J.M.F.; Ferreira, P.C.G.; Cardoso, M.A.; Mansur, E. Genetic and epigenetic analyses of in vitro grown plants of Arachis villosulicarpa Hoehne (Leguminosae) obtained from seed explants through different regeneration pathways. Journal of Horticultural Science & Biotechnology, v.83, p.737-742, 2008.
Bertalan M.; Albano, R.; Pádua, V.L.M.; Rows, L.; Rojas, C.A.; Hemerly, A.S.; Teixeira, K.; Riogene Consortium; Baldani, J.I.; Ferreira, P.C.G. Complete genome sequence of the sugarcane nitrogen-fixing endophyte Gluconacetobacter diazotrophicus PAL5. BMC Genomics, v.10, p.450, 2009.
Rows, L.; Araujo, J.; Hemerly, A.S.; Baldani, J.I. Validation of a transposome system for mutagenesis of Gluconacetobacter diazotrophicus through characterization of a flagellar mutant. Archives of Microbiology, v.189, p.397-405, 2008.
Masuda, H.P.; Cabral, L.M.; De Veylder, L.; Tanurdzic, M.; De Almeida Engler, J.; Geelen, D.; Inzé, D.; Martienssen, R.A; Ferreira, P.C.G; Hemerly, A.S. ABAP1 is a novel plant Armadillo BTB protein involved in DNA replication and transcription. EMBO Journal, v.27, p.2746-2756, 2008.
Cavalcante, J.J.; Vargas, C.; Nogueira, E.M.; Silva, F.V.; Schwarcz, K.D.; Baldani, J.I.; Ferreira, P.C.G.; Hemerly, A.S. Members of the ethylene signalling pathway are regulated in sugarcane during the association with nitrogen-fixing endophytic bacteria. Journal of Experimental Botany, v.58, p.673-686, 2007.
Lira C.; Cardoso, M.A.; Ferreira, P.C.G. Uso de microssatélites em estudos de biologia da conservação. Floresta e Ambiente, v.13, p.25-36, 2007.
Rocha, F.R.; Papini-Terzi, F.S.; Nishiyama, M.J.R; Vincentini, R; Duarte, R.D.C.; Rosa J.R., V.E.; Vinagre, F; Hemerly, A.S.; Silva, M.C.E.; Menossi, M.; Souza, G.M. Signal transduction-related responses to phytohormones and environmental inputs in sugarcane. BMC Genomics, v.8, p.71, 2007.
Silva, F.V.; Vilar, C.V.; Schwarcz, K.D.; Japiassu, J.; Nogueira, E.M.; Baldani, J.I.; Ferreira, P.C.G.; Hemerly, A.S. SHR5: A New Plant Receptor Kinase involved in graminea-N2 fixing bacteria association. Journal of Experimental Botany, v.57, p.559-569, 2006.
Barreto, M.B.B.B.; Mcivor, L.; Maggs, C.; Ferreira, P.C.G. Molecular systematics of Ceramium Roth (Ceramiaceae, Rodophyta) from Brazil. Journal of Phycology, v.42, p.905-921, 2006.
Eloy, N.B.; Coppens, F.; Beemster G.; Hemerly, A.S.; Ferreira, P.C.G. The Arabidopsis Anaphase Promoting Complex (APC): regulation through subunit availability in plant tissues. Cell Cycle, v.5, p.1957-1965, 2006.
Arencibia, A.; Silva, F.V.; Estevez, Y.; Bernal, A.; Perez, J.; Cavalcante, J.J.; Santana, I.; Hemerly, A.S. Gluconoacetobacter diazotrophicus Elicitate a Sugarcane Defense Response Against a Pathogenic Bacteria Xanthomonas albilineans. Plant Signaling & Behavior, v.1, p.265-273, 2006.
Arencibia, A.; Estevez, Y.; Vinagre F; Bernal, A.; Perez, J.; Carmona, E.; Hemerly, A.S.; Santana, I. Induced-resistance in sugarcane against pathogenic bacteria Xanthomonas albilineans mediated by an endophytic interaction. Sugar Tech (New Dehli), v.8, p.272-280, 2006.
Nogueira, E.M.; Olivares, F.L.; Japiassu, J.; Vilar, C.V.; Silva, F.V.; Baldani, J.I.; Hemerly, A.S. Characterization of glutamine synthetase genes in sugarcane genotypes with different rates of biological nitrogen fixation. Plant Science (Limerick), 2005.
Arencibia, A.; Carmona, E.; Perez, G.; Silva, F.V.; Hemerly, A.S.; Santana, I. Identification and characterization of hypervariable sequences within the Saccharum complex. Plant Science (Limerick), 2005.
Cardoso, S.R.S.; Provan, J.; Lira C.; Pereira, L.O.R.; Cardoso, M.A.; Ferreira, P.C.G. High levels of genetic structuring as a result of population fragmentation in the tropical tree species Caesalpinia echinata Lam. Biodiversity and Conservation, v.14, p.1047-1057, 2005.
Masuda, H.P.; Ramos, G.B.A.; Engler, J.A.; Mors, L.C.; Coqueiro, V.M.; Macrini, C.M.T.; Ferreira, P.C.G.; Hemerly, A.S. Genome based identification and analysis of the Pre-Replicative Complex of Arabidopsis thaliana. FEBS Letters, v.574, p.192-202, 2004.
Vincentz, M.; Cara, F.A.; Okura, V.K.; da Silva, F.R., Pedrosa, G.L.; Hemerly, A.S.; Capella, A.N.; Marins, M.; Ferreira, P.C.G; et al. Evaluation of monocot and eudicot divergence using the sugarcane transcriptome. Plant Physiology (Bethesda), EUA, v.134, p.951-959, 2004.
Lira C.; Cardoso, S.R.S.; Ferreira, P.C.G.; Cardoso, M.A.; Provan, J. Long term population isolation in the endangered tropical tree species Caesalpinia echinata Lam revealed by chloroplast microsatelites. Molecular Ecology, v.12, p.3219-3225, 2003.
Vilar, C.V.; Pádua, V.L.M.; Nogueira, E.M.; Silva, F.V.; Masuda, H.P.; Silva, F.R.; Baldani, J.I.; Ferreira, P.C.G.; Hemerly, A.S. Signaling pathways mediating the association between sugarcane and endophytic diazotrophic bacteria: a genomic approach. Symbiosis (Philadelphia), v.35, p.159-180, 2003.
Bilou, I.; Frugier, F.; Folmer, S.; Serralbo, O.; Eloy, N.B.; Ferreira, P.C.G.; Willemsen, V.; Wolkenfelt, H.; Weisbeck, P.; Scheres, B. The Arabidopsis Hobbit gene encodes a CDC27 homologue that links the plant cell cycle to progression of cell differentiation. Genes & Development, v.19, p.2566-2575, 2002.
Nogueira, E.M.; Silva, F.V.; Masuda, H.P.; Vilar, C.V.; Pádua, V.L.M.; Silva, F.R.; R.V.Dos Santos; Baldani, J.I.; Ferreira, P.C.G.; Hemerly, A.S. Expression of sugar cane genes induced by inoculation with Gluconacetobacter diazotrophicus and Herbaspirillum rubrisubalbicans. Genetics and Molecular Biology, v.24, p.199-206, 2001.
Andrietta, M.H.; Eloy, N.B.; Ferreira, P.C.G.; Hemerly, A.S. Identification of sugar cane cDNAs encoding components of the cell cycle machinery. Genetics and Molecular Biology, v.24, p.61-68, 2001.
Ramos, G.B.A.; Engler, J.A.; Ferreira, P.C.; Hemerly, A.S. DNA replication in plants: isolation of a cdc6 homolog from Arabidopsis thaliana. Journal of Experimental Botany, v.52, p.2239-2240, 2001.
Cardoso, S.R.S.; Eloy, N.B.; Provan, J.; Cardoso, M.A.; Ferreira, P.C.G. Genetic differentiation of Euterpe edullis Mart.populations estimated by AFLP analysis. Molecular Ecology, Reino Unido, v.9, p.1753-1760, 2000.
Vilar, C.V.; Nogueira, E.M.; Vinagre, F.; Masuda, H.P.; Padua, V.L.M.; Baldani, J.I.; Ferreira, P.C.G.; Hemerly, A.S. Characterization of a sugarcane gene that is induced by association with endophytic bacteria. Current Palnt Science and Biotechnoly in Agriculture, v.38, p.426-426, 2000.
Hemerly, A.S.; Ferreira, P.C.; Montagu, M.V.; Engler, G.; Inze, D..Cell division events are essential for embryo patterning and morphogenesis: studies on dominant-negative cdc2aAt mutants of Arabidopsis.Plant Journal, Inglaterra, v.23, n.1, p.1-7, 2000.
Hemerly, A.S.; Ferreira, P.C.G.; Montagu, M.V.; Inzé, D. Cell Division And Plant Morphogenesis: Is There An Essencial Link? BioEssays (Cambridge), v.21, p.29-37, 1999.
Vargas, C.; Lopes, A.; Hemerly, A.S. Adaptation of the differential display RT-PCR techique to isolate sugarcane genes induced by plant asociation with endophytic nitrogen-fixing bacteria. Anais da Academia Brasileira de Ciências, v.71, p.515-520, 1999.
Cardoso, M.A.; Provan, J.; Powell, W.; Ferreira, P.C.G.; Oliveira, D.E. High Genetic Differentiation Among Remnant Populations Of The Endangered Caesalpinia Echinata Lam (Leguminosae-Caesalpinoidea). Molecular Ecology, v.7, p.601-608, 1998.
Niebel, A.; Elgler, J.A.; Hemerly, A.S.; Ferreira, P.; Montagu, M.V.; Gheysen, G. Induction Of Cdc2a And Cyclin 1 Expression In Arabidopsis Thaliana During Early Phases Of Nematode-Nurse Cell Development. Plant Journal, v.10, p.1037-1044, 1996.
Hemerly, A.S.; Engler, J.; Montagu, M.V.; Inze, D.; Ferreira, P..Dominant Negative Mutants Od The Cdc2 Kinase Uncouple Cell Division From Iterative Plant Development.EMBO Journal, Reino Unido, v.14, p.3925-3936, 1995.
Ferreira, P.C.G.; Hemerly, A.S.; Engler, J.A.; Bergounioux, C.; Burssens, S.; Montagu, M.V.; Inze, D. Three Discrete Classes Of Arabidopsis Cyclins Are Expressed In Different Intervals Of The Cell Cycle. PNAS.Proceedings of the National Academy of Sciences of the United States of America, v.91, p.11313-11317, 1994.
Ferreira, P.C.G.; Hemerly, A.; Montagu, V.; Inzé, P..Control Of Cell Proliferation During Plant Development.Plant Molecular Biology, Holanda, v.26, p.1289-1303, 1994.
Ferreira, P.C.G.; Hemerly, A.S.; Engler, J.A.; Montagu, M.V.; Inze, D. Developmental Expression Of The Arabidopsis Cyc1at Cyclin. The Plant Cell, v.6, p.1763-1744, 1994.
Hemerly, A.S.; Ferreira, P.C.G.; Engler, J.A.; Montagu, M.V.; Inzé, D. Cdc2a Expression In Arabidopsis Is Linked With Competence For Cell Division. The Plant Cell, v.5, p.1711-1723, 1993.
Ferreira, P.C.G.; Hemerly, A.S.; Montagu, M.V.; Inzé, D. A protein phosphatase 1 from Arabidopsis thaliana restores temperature sensitivity of a Schizosaccharomyces pombe cdc25ts/wee1- double mutant. Plant Journal, v.4, p.81-87, 1993.
Hemerly, A.S.; Ferreira, P.C.G.; Inzé, D.; Montagu, M.V. The control of of cell cycle in Arabidopsis plant cell cultures. Journal of Plant Research, v.3, p.51-56, 1993.
Inzé, D.; Ferreira, P.C.G.; Hemerly, A.S.; Engler, J.A.; Bergounioux, C.; Veylder, L.; Engler, G.; Montagu, M.V. Cell cycle control in Arabidopsis thaliana. Acta Botanica Gallica, v.140, p.583-590, 1993.
Hemerly, A.S.; Bergounioux, C.; Montagu, M.V.; Inze, D.; Ferreira, P.C.G. Genes Regulating The Plant Cell Cycle: Isolation Of A Mitotic-Like Cyclin From Arabidopsis Thaliana. PNAS.Proceedings of the National Academy of Sciences of the United States of America, v.89, p.3295-3299, 1992.
Inzé, D.; Hemerly, A.S.; Ferreira, P.C.G.; Montagu, M.V. Control of Cell Division in Plants. Biochemical Society Transactions, v.20, p.80-84, 1992.
Bergounioux, C.; Perenes, C.; Hemerly, A.S.; Qin, L.; Sarda, C.; Inzé, D.; Gadal, P. A cdc2 gene from Petunia hybrida is differentially expressed in leaves, protoplasts and during various cell cycle phases. Plant Molecular Biology, Holanda, v.20, p.1121-1130, 1992.
Hemerly, A.S.; Ferreira, P.C.G.; Villaroel, R.; Montagu, M.V.; Inzé, D. The Arabidopsis funcional homolog of the p34cdc2 protein kinase. The Plant Cell, v.3, p.531-540, 1991.
Vainstein, A.; Ferreira, P.C.G.; Peterson, C.; Verbeke, J.; Thornber, P. Expression of the Major Light- Harvesting Chlorophyll a/b- Protein and its Import intoThylakoids of Mesophyll and Bundle Sheath Chloroplasts of Maize. Plant Physiology (Bethesda), v.89, p.602-609, 1989.
Lake, J; Cruz, V.L.; Ferreira, P.C.G.; Morel, C.; Powell, W.; Simpson, L. Evolution of Parasitism: Kinetoplastid Protozoan History Reconstructed from Mitochondrial rRNA gene Sequences. Proceedings of the National Academy of Sciences of the United States of America, v.85, p.4779-4783, 1988.
Schuster, G.; Nechustai, R.; Ferreira, P.C.G.; Thornber, P.; Ohad, I. Structure and Biogenesis of Chlamydomonas reinhardtii Photosystem I. European Journal of Biochemistry (Print), v.177, p.411-416, 1988.